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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

0.8.0

Fixed

  • Fix Macoma platform in platform vocabulary which is a ISMER platform.
  • Fix makefile to use uv run commands
  • Fix Amundsen Vocabularies accepted_units issue, N2 accepted_units
  • Fix event_comments attributes from ODF datasets

0.7.0

Added

  • Add compatibility with PME wipers txt format.
  • Improve Quebec Ocean - Amundsen Vocabulary
  • Include Quebec Ocean - Amundsen Vocabulary to ODF vocabularies.
  • Add tools to work with vocabularies.
  • Add vocabularies tests.
  • Add Amundsen CSV format parser
  • Use uv as package manager
  • Add vocabularies tests

Fixed

  • Fixed warning regarding star_oddi dayfirst=True missing input
  • Rename pme parsers by removing minidot_. New functions are called pme.txt, pme.txts, pme.cat. Maintain still a placeholder for those functions.
  • Major refactor the whole code base to handle a number of issues raised by Ruff.
  • Make tests compatible with windows environment.
  • Fixed typo in NAFC pcnv parser, new sample files added to test files

0.6.1 - 2024-08-30

Added

  • Add onset.xlsx parser.
  • Make onset.xlsx and onset.csv raise a pytz.exception.AmbiguousTimeError when jumps associated with daylight saving time changes are detected.
  • Add star_oddi.DAT ctd test file and fix timestamp format handling.

0.6.0 - 2024-08-20

Added

  • Add odpy convert input_table input through config file, which gives the ability to list multiple file glob expression and associated metadata.
  • Add Onset.csv timestamp format: "\d+\/\d+\/\d\d\d\d\s+\d+:\d+:\d+" = "%m/%d/%Y %H:%M:%S"
  • Rely on ruff for format and linter testing
  • Add option to pass a list of input_path paths via the configuration file or a os path seperator list via the command line interface or the configuration
  • Add test to test version within package __init__.py, CHANGELOG.md, and pyproject.tom

Fixed

  • seabird parsers module import sorting
  • nafc ruff check issues

0.5.2 - 2024-06-22

Fixed

  • Docs build

0.5.1 - 2024-06-20

Fixed

  • Remove default sentry dsn from convert default configuration file.
  • Fix deprecation issue in nafc.metqa loader

0.5.0 - 2024-06-20

Added

  • Test get_path_generation_input on all test files and parsers
  • Run all tests in parallel with pytest-xdist
  • Add --parser-kwargs option to odpy convert command line interface to pass inputs to parser

Fixed

  • Fix star_oddi parser time variable to output a datetime dataarray.
  • Fix onset parser date time handling.
  • Avoid reimporting parser if already imported in read.file with parser defined via string expression.
  • Fix Amundsen int timestamp format
  • Drop trip_tag attribute from dfo.nafc.pcnv parser
  • Make dfo.nafc.pcnv parser attempt to retrieve metqa file info by default.

v0.4.0 - 2024-05-04

Added

  • Test platforms vocabulary items and match them to NERC C17 vocabulary.

Changed

  • Refactor Seabird Parser
  • Handle better processing related attributes
    • On-platform processing
    • SBE Data Processing modules
    • Post processing (NAFC pcnv Format * QA Applied:)
  • Retrieve more of the information available stored within Seabird header as attributes
  • Structure history
  • Upgrade odf.bio reference NetCDF to reflect the changes.
  • Upgrate dfo platforms for the odf and nafc parsers.

Removed

  • Historical ODF platform vocabulary which wasn't used anywhere.